Scaffold PicViral_1003501

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003501
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8746
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036924	Metagenome / Metatranscriptome	169	N
F039706	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10035013	F036924	AGGA	MPHTYYGRAGTTHKVDFTDASVASSTAFGSTTSVVMLCAKTAGCHFHIASVPVATTSLSFLPKDSVIYVQVNGGDKIAAIREASASGSLFATELI*
PicViral_10035014	F039706	GAGG	MRTLNDYFIMGGNMTAIQTADNASPVVVIPDEGKLKVIYMNVHTVIDAATTFDIMKNGTDTTIDATLADATVDETGVALTLGGTVEVNAGDAINIRSNGEQTASTTADVSYIIRR*