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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003690 Open in IMG/M |
| Scaffold ID | PicViral_1002313 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7402 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
| Coordinates | Lat. (o) | 53.0 | Long. (o) | Alt. (m) | Depth (m) | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000782 | Metagenome | 894 | Y |
| F004908 | Metagenome / Metatranscriptome | 419 | Y |
| F008153 | Metagenome | 338 | Y |
| F012880 | Metagenome | 276 | Y |
| F025764 | Metagenome | 200 | Y |
| F062819 | Metagenome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| PicViral_10023131 | F025764 | GGA | VEKITSVKDLININHNMASVSYGGLAGMLVATVKWAGISIREDQTAYALKLLERATAERKKVDDVVERYNRRFNR* |
| PicViral_100231316 | F008153 | GGAG | MPKDLITVNKVNIQPLIENLVEMVKDKKATGELDDLISAKVPEKTSADWKLICGVLCNAIVEWVAINKDNEVDPKDLLKHLQSDIGYIMTRLGLM* |
| PicViral_100231317 | F012880 | GGAG | MKFNIIAFIWSTALVLLTFQICLLWIDWEFTNTIIYKFALLMNGFMFGLVINEWSNNA* |
| PicViral_100231318 | F000782 | GAGG | MTKTEFKDSVKGIFSVRWLKNNGEEGYIHRGILGLNKKVDGQPNEHNNYVLVYKLGNGYGTKRRWGNVNPNTVTHINGVAV* |
| PicViral_10023134 | F062819 | GAG | MIYSKLLRLKDELGKKALRDPHTADELLVKKNYGRVMTILWKRYEYDIDTAMEDYRKQDQIEEITQVIRS* |
| PicViral_10023139 | F004908 | AGGA | MATLKITDMFQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTERGGEARFWVVVFQDYEVRLQTKAQIMDVVMEGHRNRDDEDNAKFERTKNGTEEHITLD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |