Scaffold PicViral_1001309

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001309
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9294
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077177	Metagenome	117	N
F091871	Metagenome	107	N
F103080	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100130910	F091871	GGAG	MVGAKGRPRRMETKHTTYNVLLPETTITAIKKEAENSGVSSAQVVRDMLADGLGGRLFHSLKSTEKEKGGTIQSWCNAIKLAIQTVRDAYPVPQFADGRTLGDQIAGKIEAALEKGKEKGPDD*
PicViral_100130913	F077177	AGGAG	MPKQQLGGGAIFRNQRKVKELTLAAKCVPDSNPKAPELSGDVGFTKEAVRLLVAQFKEKKTEVSEITNQHEAKLEIAAKIKTQKDGVTPYLSVWFSPPYEKAAEPKPKPVSDDFDDDIPF
PicViral_100130917	F103080	GGA	VIRRALRDLCESDDSPRDEAIAWVGDGKGEDFTAVCSAADLEPSAVAKLAHRILALGPDRGKVYLTEVMEVTEGDRDNRTSD*