Scaffold PicViral_1000878

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000878
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24947
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019633	Metagenome	228	Y
F034540	Metagenome	174	Y
F078579	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100087812	F078579	GGA	MIQELWTPAGAAYNGIVPVGRNAETGSRIVSHQLRVEAKDRFGRVHKQIIRVLADDETSQAEIEEMMGHAAENFVAEVREKYTKRPPTEDERKQIGKALNEFLRHRTKRQESTSNRIYFKGTGNGTTSRYTTKRHG*
PicViral_100087822	F034540	AGGAG	MATGDVTISLAVEGGVTKTVVLDNATRALSRTHVAGLDAAIDTDAEWQVHNINKLGKVILAQANAAAQAAASWTAQTFTAAT*
PicViral_100087825	F019633	AGGAGG	MNWLLKLLPADKRALLELAIRITASLDTAAERKAVAEYGMKMLSADSKGGHLCTVGEWAKFGSKLGILKGPR*