Scaffold JGI25404J52841_10006396

Overview

Basic Information

• Taxon OID: 3300003659
• Scaffold ID: JGI25404J52841_10006396
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2462
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067717	Metagenome / Metatranscriptome	125	Y
F094205	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25404J52841_100063962	F067717	GAGG	MRSRSILLAWLWTALSISAATLATYRMQPLRRDADALLVQSRAHADAFATSFDGQFADQQLDTFQQRRAIITRVQSWQRLQLLGALGAFGGVFAVWLLWMLRKLQADLTLGEPGTERRSPVA*
JGI25404J52841_100063964	F094205	N/A	VARTGRSCGAGLAGLVALIAGCAHQAYQPAPARVEAPAGQAVFGDCALGDGSTVPSEIPEGSLGPPGEAEHGLACQLSGQLDTLGEPSLFPLPRSAEVYRLLWIRSGARPVSVRFERQGNTGQLRGAQTTGKGLQNPGELLEESTAVASPTQVQDLLARIEAARFWSPAPSPSXLPSISSGSLWIFEGARGGEYRIWVFARDTLARDPGFSALGRSLLAASGLHVEGGVY*