Scaffold JGI25404J52841_10002225

Overview

Basic Information

• Taxon OID: 3300003659
• Scaffold ID: JGI25404J52841_10002225
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3639
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006999	Metagenome / Metatranscriptome	360	Y
F040281	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25404J52841_100022253	F040281	AGG	MRLIFNCSWSQNQRSVRTILFAATTFAALIGCQSAAEKQHPEAEAQSDDLSNCARIRIASGGCEGKSGLTEVYIENMHKDRAVRATVRKHSPQGDDDTEYAIAEAGQLFIGCGGGGTSFDVVGCKVLKGKAEKR*
JGI25404J52841_100022255	F006999	GAG	MLQALGQFEQALRSTTPCEVSSNACQTREIWLAQQAAQAADRYLTTPDAKESDWRLVAQSVIKYSQARSEAYATYVRARSQDPDAAEKAYHSTVDSLEQDFIGQLKATLRSDENSREIAQRFGLIDS*