NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SLW02_104093

Scaffold SLW02_104093


Overview

Basic Information
Taxon OID3300003653 Open in IMG/M
Scaffold IDSLW02_104093 Open in IMG/M
Source Dataset NameSubglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location NameWest Antarctica
CoordinatesLat. (o)-84.24Long. (o)-153.694Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
SLW02_1040932F012098GAGMPKVHSIGPAHFVQITNFPFKWGKKIIVRGWTQEIEPPFRTSDPLIVRLPYYKALVFGRWTGTKTEEEALNGALQRRDLTYEDFTEEAGWTPAPDSDRKESLEDIDSRLDSVDGALDVHDWQTDDRMAKKSE*
SLW02_1040933F084140N/AMEHSMYTIGKLMTEWQRSQNSDSLLDEVELGAEAFLAIAKELRSRR*

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