Scaffold SLW02_102071

Overview

Basic Information

• Taxon OID: 3300003653
• Scaffold ID: SLW02_102071
• Source Dataset Name: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1624
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location

• Location Name: West Antarctica
• Coordinates
  • Lat. (^o): -84.24
  • Long. (^o): -153.694
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099846	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
SLW02_1020712	F099846	N/A	FSGFRLYSAKAGLLADVGASNNSGLGGTIEGGLIAAAIKPTVQEVTLKPKTLQYVFEASEVLEQLVDNSRDDNFGSLAQQRVYASDQFKERVNLMLTKIPVDVAATDVLQRLDLESLDRIVSSKAEYDFEAHVNVAALYTPWTSANGTGINRAGATTWDSYVTSPSGTIGTADVLTDSVLRSALANVRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVSVNGVESFTGTGAGLHISTIYGLPFIPSKDTPTSAEGSVGDLFILNTSADKNSPSKPLIGLQILKPIVYYEAGKRQQGYPFINEAFTDRAMYNMLAETGCTNFKVHAKIRDIASGI*