Scaffold SLW02_101057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SLW02_101057

Scaffold SLW02_101057

Overview

Basic Information
Taxon OID	3300003653 Open in IMG/M
Scaffold ID	SLW02_101057 Open in IMG/M
Source Dataset Name	Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3594
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location Name	West Antarctica
Coordinates	Lat. (^o)	-84.24	Long. (^o)	-153.694	Alt. (m)		Depth (m)	800
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y

Sequences

Protein ID	Family	RBS	Sequence
SLW02_1010575	F001043	GAG	MFPSMKQLDIQGDKMSDYKEGFDDGVKFAREEMIDKLREIDINDIDSWLLDRLADMIEGGKL*
SLW02_1010576	F000311	GGAG	MYFELQAKTPKSFHHAVWEADLIGLDPKVLSEALLTFNIGTGSIEKVSNLRDKHNLTEIYVSEYETTGYTGR*

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