Scaffold SLW30_100267

Overview

Basic Information

• Taxon OID: 3300003650
• Scaffold ID: SLW30_100267
• Source Dataset Name: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3490
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location

• Location Name: West Antarctica
• Coordinates
  • Lat. (^o): -84.24
  • Long. (^o): -153.694
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003408	Metagenome / Metatranscriptome	488	Y
F006841	Metagenome / Metatranscriptome	363	Y
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
SLW30_1002672	F103268	GGAGG	MTDYSIDAMYEIRRHLWAELLSSALLDADSYYADNLGEAIIPIIPIQQQPELNQFLSGKTHIVYDKIGMSYQDNWMICQERILFTIYSVDVAEINSIRNLMIDVFRRMDDSARDLNVSKTTPKIKFFNTSVIEVSPTSPSEELQGFMSADVILETQYARTVGQNGRFD*
SLW30_1002674	F006841	AGGAGG	LATTVYDVEEIELQNGVVVKLKPLTIKELRKFMVVVQKTVKAKNEDETLSILVDACAVALEKQLPELVKDRDAFEDVLDVPTINRILDVCGGIKMDDANLLAAAVLDGQN*
SLW30_1002675	F003408	AGAAG	MPELVQTFKAIQKSESEKRIFLASLQGVEMNSDEQENKGPTFEDVQRRALGINTSGDDVVSLQGGLAAQAGFGIGAGLGYSKE*