Scaffold SLW30_100001

Overview

Basic Information

• Taxon OID: 3300003650
• Scaffold ID: SLW30_100001
• Source Dataset Name: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28949
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location

• Location Name: West Antarctica
• Coordinates
  • Lat. (^o): -84.24
  • Long. (^o): -153.694
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027826	Metagenome / Metatranscriptome	193	Y
F103135	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
SLW30_10000124	F027826	GGA	MAKPWQSRQEMLVDLALESAISDPETIRQIRPVTPIQMSPERYGYSKRESGIMDVLSLQRNAPSNRSWVSGAPVMFRNGFIDDSFEGSSRYSMQSLWS*
SLW30_10000132	F103135	GGAG	MASDDYRLLVCKTHGTMWKLRPYDGPGEYDMELREICNRHNAQVPNPEACKASIFRTDAETAKKLDMETILTNKLKDHDVYIKDYRDELKVDALKCYSRHNRPKHGCIDWRIDAKIIGRKTGVPKDKLQYLCYYCPAAEYYTHRERIELGLYD*