Scaffold JGI26380J51729_10052254

Overview

Basic Information

• Taxon OID: 3300003619
• Scaffold ID: JGI26380J51729_10052254
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26380J51729_100522541	F045801	GGAG	MFWIEIILSIWALIAIRLLAQGHKLGPLVGWVGQILWVSMWIFTEQYGFILIDTGLAYIYLEAY
JGI26380J51729_100522542	F103382	GAG	MNELIITIMLVIPAPHKMVDWTINEVPTQIQLIHEDGTEVSYNATAVPCDYKPRSTNEMVFVSPQAYTEDNRCYSIFDLSSPRFIRHPNYWHGVKNVLD*
JGI26380J51729_100522545	F073426	N/A	LALFYFSYRAPVLVSVPKVEKAINMGIWSESNQGNSLAEK*