Scaffold JGI26381J51731

Basic Information
Taxon OID	3300003618 Open in IMG/M
Scaffold ID	JGI26381J51731_1005551 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003618 Open in IMG/M

Scaffold ID

JGI26381J51731_1005551 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4454
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4454

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)	120
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

120

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F081198	Metagenome / Metatranscriptome	114	N
F085538	Metagenome / Metatranscriptome	111	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26381J51731_10055511	F081198	N/A	WIETHSYQKQTGNGEVQEAVSTSGTIPGVKQASNISIQLGSKTAIPIRQYGQFQAVPTGQNTARFYRITVPDAGAITESPTTDITAVTHTLTAIDVTCNIRGWRQVVEKANLEDYPASFLNAIRETARLEAIRDEHKLILQDLGALDHDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFESLISSTSLSEYTQIGNAGITRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKCWGLASQRKMEIEFQKNIAGQYWDIVWTHRVGVDILDPNTYVIVSTVNA*
JGI26381J51731_10055512	F090244	N/A	MDVEGRIFEKLDKIEDRINDLCVRLSAMETEYNAHIESMQRTQDSKLRRRDYTLGIMAVGLTIVEVFRSLGII*
JGI26381J51731_10055514	F037175	GGA	LLNLKVNNIGRWIEKWDIHVWDLKDTNPQFFEHVKTTSGQKINTSMPSGVTGKFRMDLYLHDSSNVFXARENSDRIMHETCHAILIGTPHFVSGVHDNINNRFQATFWYWDRFKYTKFTLSIIDIRAYL*
JGI26381J51731_10055515	F085538	N/A	LTSEHIFKVGVGINYFDDTKGLIKILTNDTVYDYITKFYVIDGLYAGRNDKQESDPTYLKDLQNIYSKIHIVDMNNKTQIQKRNKYWELAKKDKMDYMIVCDSDEYMDIKPDILDNSLRTIQDRPEKCYPIKQHMVGITTMSRPRLFKGPYTFRHLQNEKENIISHGSLYDKDDTEIINQMYAWFKDHPKREINSDNQSGIDGIEMWHNKEFRTKERIIADRVYYDNTPNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26381J51731_1005551

Overview

Ecosystem & Geography

Associated Families

Sequences