Scaffold JGI20129J51889_1013883

Overview

Basic Information

• Taxon OID: 3300003607
• Scaffold ID: JGI20129J51889_1013883
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004156	Metagenome / Metatranscriptome	450	Y
F042425	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20129J51889_10138832	F004156	GAGG	MSIKPSEEFELTPIMRKTISAMLEGVIVTLTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDVVIAWFSVCGYFSEAETEHLQELFNHLWGYYDMPLPKSRRRKRRTCTTSLNHNG*
JGI20129J51889_10138833	F042425	AGGA	MVFSVSKPEENGPCPSQCQLEHRLTAIEYSLKELNMKVDLLSSNVRAQAEESKRYARMAVYISLTSLAVLASVLLAVMIK*