Scaffold JGI26463J51803_1009223

Overview

Basic Information

• Taxon OID: 3300003605
• Scaffold ID: JGI26463J51803_1009223
• Source Dataset Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2299
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F086364	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26463J51803_10092233	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVEALTDRNFGWHEDALKDEWSYTGEFSFICVDPETFKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA*
JGI26463J51803_10092234	F069506	GGAGG	MQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWNDPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFXGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIIGLVIKLLNKIQPELVTE*