Scaffold JGI26247J51722_1000454

Overview

Basic Information

• Taxon OID: 3300003588
• Scaffold ID: JGI26247J51722_1000454
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17534
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015153	Metagenome / Metatranscriptome	257	Y
F033251	Metagenome	178	N
F049234	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26247J51722_100045412	F033251	AGGA	MADKKKRNLTSTKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEKASNPVEDLTPFQKNLDETLFGGVSPDDKPKRKDAGKTRGPYKPRVTKLSMVSEPTPVDTFSVPKKAVYVAVVVALTIAGWYLGRVS*
JGI26247J51722_100045421	F049234	AGGA	MMARIELELTAIVYDNSEFECEEYKIVAFVSDWNDGEQVTEAAGKAVNDHMNHSKKLCIGGCAKIFVDKEKVADAIFQNPDADEGLFDKAAELFGLEEGTVH*
JGI26247J51722_10004548	F015153	AGGA	MKLQEIFDAASVHLMGMEGPSLDMDGDACVYRGYDDDCEFNGQKCAVGLFIDDEHYSSDLEGQGISGGQAVADAVAASWGQDDLTVEQISLLADLQNAHDYTSRGSSLIPDHTWSKNIVAALDGVATKFHLRFDPKGASA*