Scaffold JGI26253J51717_1041930

Overview

Basic Information

• Taxon OID: 3300003583
• Scaffold ID: JGI26253J51717_1041930
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 892
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045851	Metagenome / Metatranscriptome	152	Y
F046001	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26253J51717_10419301	F045851	N/A	MTLQDHNTINELIKFYQKNRSEADYKXGIQPIDGHKXDKLMMSNYLMGSKLDLNIY*
JGI26253J51717_10419302	F046001	N/A	MTKIQFNTNYKTINQITNSNKLNRPIHIMSDGLYVDNSDLETVGKILDRNLIKYKLK*