Scaffold JGI26253J51717_1006970

Overview

Basic Information

• Taxon OID: 3300003583
• Scaffold ID: JGI26253J51717_1006970
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3493
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26253J51717_10069701	F007392	N/A	MKILLILPIFFCSLAFSEDFNLICEGERKVRNLSSKEFNVTNFESVLLKINKNSMDYIGLNSGRSYFLSNREYTAPKRPPHEDIKITEQYEYSPKTIKASQTIADSGNSEGSSISLFSLDVNLLTGELNETEIIRNKQTNVKSMSNNFQALCKREDRSY*
JGI26253J51717_10069702	F005012	AGG	VNFEVIKTILISLLLFPSIVFANDFELLCKGEEAKYLEEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSFVKSKDNITGVRNFSTNALIKGRVIHTSKIDKVEINILTNDIFWTHEFNRVDKTNNEAKTIYAFRKNFQGKCK*
JGI26253J51717_10069703	F012576	N/A	MNSLLAYIQFIYIGLVIYGSVLTFGDTSVNTSISGIVAPILAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS