Scaffold Ga0007412J51696_1025848

Overview

Basic Information

• Taxon OID: 3300003573
• Scaffold ID: Ga0007412J51696_1025848
• Source Dataset Name: Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_28 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1945
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023966	Metagenome / Metatranscriptome	208	Y
F044745	Metagenome / Metatranscriptome	154	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007412J51696_10258482	F081702	GGAG	MNDQNRVLIRQGSRELSPEEVEQVIGGFAHTNVITFGPTGRDGDGLLGES*
Ga0007412J51696_10258484	F044745	AGGAG	MNNQNRVLARKGARDLNEQEVAMVSGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0007412J51696_10258486	F023966	AGGAGG	MDQDNRVLTRKGARELSEQEVQTVTGAFKVRRTLTPCFVDSKQQFLNGDQSIGECGP*