Scaffold FS900DNA_10131838

Overview

Basic Information

• Taxon OID: 3300003542
• Scaffold ID: FS900DNA_10131838
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.87992
  • Long. (^o): -129.80294
  • Depth (m): 1917

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
FS900DNA_101318381	F024648	N/A	GDMFRTKNGLGLIVKKSGGYFTYSTVGSDQRKACQAIETKRFYSYCDDMSHGQILEVMLLPNRKYRRKRK*
FS900DNA_101318382	F005524	GAG	MDIGDKVLHFGTGSVGTIIDSSYEVDTPFQQQLNVQWEDDLAPHKDSWERRNDLSIMETPVYDFNICK*