Scaffold FS900DNA_10031745

Overview

Basic Information

• Taxon OID: 3300003542
• Scaffold ID: FS900DNA_10031745
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1941
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.87992
  • Long. (^o): -129.80294
  • Depth (m): 1917

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F040683	Metagenome	161	Y
F058216	Metagenome	135	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
FS900DNA_100317453	F040683	GGAG	MKKYRVWGYETQGYYIDLDANNKQDAHDKAMDVNRDDWIEGNDGESTCFDINKKDMEVIK
FS900DNA_100317456	F013700	GAG	MNIDFKNLTYPFEELPDAPYTIVRILNECYNDYSNGNLGDGERMADGMQVRQEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYSEPPETNEDDDEV*
FS900DNA_100317457	F096041	AGGAGG	MKLNKNKEYIYVTRTMKINIPAIYCDDAIEKVKMMKKNDLIPKELGTLYTRCRVRKSGDEYRL*
FS900DNA_100317459	F058216	AGGAG	MNKTIGQLIKEDHWSTRRLAVAMNITNKDLEGVKWEKSNKPYKKSKKKSYLW*