Basic Information | |
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Taxon OID | 3300003542 Open in IMG/M |
Scaffold ID | FS900DNA_10031745 Open in IMG/M |
Source Dataset Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1941 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Axial seamount, northeast pacific ocean | |||||||
Coordinates | Lat. (o) | 45.87992 | Long. (o) | -129.80294 | Alt. (m) | Depth (m) | 1917 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013700 | Metagenome | 269 | Y |
F040683 | Metagenome | 161 | Y |
F058216 | Metagenome | 135 | Y |
F096041 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
FS900DNA_100317453 | F040683 | GGAG | MKKYRVWGYETQGYYIDLDANNKQDAHDKAMDVNRDDWIEGNDGESTCFDINKKDMEVIK |
FS900DNA_100317456 | F013700 | GAG | MNIDFKNLTYPFEELPDAPYTIVRILNECYNDYSNGNLGDGERMADGMQVRQEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYSEPPETNEDDDEV* |
FS900DNA_100317457 | F096041 | AGGAGG | MKLNKNKEYIYVTRTMKINIPAIYCDDAIEKVKMMKKNDLIPKELGTLYTRCRVRKSGDEYRL* |
FS900DNA_100317459 | F058216 | AGGAG | MNKTIGQLIKEDHWSTRRLAVAMNITNKDLEGVKWEKSNKPYKKSKKKSYLW* |
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