Scaffold JGI20214J51650_10105268

Overview

Basic Information

• Taxon OID: 3300003541
• Scaffold ID: JGI20214J51650_10105268
• Source Dataset Name: Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1924
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Sacramento, California, United States
• Coordinates
  • Lat. (^o): 38.1072
  • Long. (^o): -121.6485
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039197	Metagenome	164	Y
F067248	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20214J51650_101052681	F067248	GGA	MVKPLRENEIVENLKLLADWLRVKYPGETFELIVAGGAAMTLEGFKGQTTDIDLLGPKELPDSLKKGIAHVGRAKRLGAEWLNTSLANMLSTSARSVKLPKYFGEISRTLEVSDNLKIGLISRQALISLKLYATTPSYRKHTEDLSNLRPSKREITEALRFVMSMDDSDPRKDDLRVVMKELGFDFDEIHRSFAKKSKPCR*
JGI20214J51650_101052682	F039197	GGA	MKSTAALQRRASPAVKTAWVALGIPFDVPMIDEKVEGIIDIEALIMTTLLLMEQDRMATDLPAWLSRFSDLVNHQKLKTMFNTMPGQHRSVILEKVTQSPFSGAPKSIRDIFGLKPVSEIISKTVQMRERKLNTLENVADASIMIRNRLQYGTGFRADIIALTHIKGFGMKGTQFAKVLCTNDSTVSRVLGDLRACRFLDQDNERIGPVELYPGMFISSQSLWNLCEIMDAAKFSSQELKRGALENLNLRHDGLGTKILKRLI*