Scaffold JGIcombinedJ51221_10003360

Overview

Basic Information

• Taxon OID: 3300003505
• Scaffold ID: JGIcombinedJ51221_10003360
• Source Dataset Name: Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4559
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.53312
  • Long. (^o): -72.189707
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007716	Metagenome / Metatranscriptome	346	Y
F015156	Metagenome / Metatranscriptome	257	Y
F022294	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ51221_100033603	F007716	GAGG	MKSAIFAVVLLTLGLLSLPVLAQQQDLQDVMNAANALSARESELLGKKDAAGIASLFTSDGLLVMLAPQFAFKPGRDAIQKHYQGIIDAGATSITLELKNMELRGNDGVWAAGNYSVTVKDKPIQGNWFRILKRENGNWKIAMEAFARAGVVDAPPAATGSPPPPAKSK*
JGIcombinedJ51221_100033604	F022294	N/A	LRKEAGPYQQQLRAMPEFRFDPPLTLKGNIVVRNLDDAVRFMIGYREARRPELQTSVLYRLEGAAGETEERHAGYAFRGWAEAEGLIIKVGE*
JGIcombinedJ51221_100033605	F015156	N/A	MTSTAEEKTFLSVAVAAIPRVAEIILEFPPDDRAGALERAERRFLAAALDHGCTEIAARSRVSIVMRRLRSHIERQRASEKKLQALFYRLTEPD*