Scaffold JGI25930J51415_1064948

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1064948
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10649481	F001019	GGAGG	MSNYEPSLEILEVNYSCSPGGVDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFIVRTYAEWE
JGI25930J51415_10649482	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLIKDRMSEREGTNE*
JGI25930J51415_10649483	F001781	N/A	TTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWEHLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEEDATD*