Scaffold JGI25930J51415_1008393

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1008393
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2127
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F033433	Metagenome / Metatranscriptome	177	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10083933	F001460	GAG	MLGYTADDVERMINAVHDSKLFYLRYPSDLIDKSQLRSDLEDTVSFLQGVLAEGHVQ*
JGI25930J51415_10083936	F082666	AGGA	MIESAEAIEPRLQKLVDLGCTGIDIMHGELKNLMLIAERELADAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNEA*
JGI25930J51415_10083938	F033433	GAGG	MYHKPMLEILEVEYSVSPGGVDEFEVYSLHEEDVMNPPLFTSTDLLEAVQFCYSLGKDFVVRTLAEWEERQMLI*