Scaffold JGI25930J51415_1000947

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000947
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6570
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F034109	Metagenome	175	N
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100094710	F097199	AGG	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMNYDKWEDKQREAYGSLRHKVRMQMIEAGYCVTCYNFMAHCECDYE*
JGI25930J51415_100094711	F034503	AGGAG	MNKAQAHEILEQQKQGLAVSQYLVNRALVVSGDLGMACLPCQATWVESTGMAQGQGIRELFQPFMDWDNPGLNQPNEGTQ*
JGI25930J51415_100094716	F040534	N/A	STLGEPMSEEEFEDKMNTYELDQQYAEYIMEHRNVGNGEILIRLMERGELYEDFKEHIMWGGK*
JGI25930J51415_10009475	F002707	GGA	MTQSQALTQALVLAIIAPDDDKASKASTLAIQIAQGLTKTQVNRCKAQALKMIGENP*
JGI25930J51415_10009476	F034109	GAG	MANKINPNRTQTDFKLDLSPEQRSILELIGGGNMTQGLKVAIDQAGHFYNCGLDPEMNLNFVGLVTTLPNQDDD*