Scaffold JGI25930J51415_1000082

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000082
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17345
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043913	Metagenome / Metatranscriptome	155	Y
F083900	Metagenome	112	N
F084136	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100008218	F083900	GGTGG	MNRLELRNAVKDRLAIKSDGSGNSLDGLITNTFVNTSLNDALNRVSMERDWWWLASTASLSFDTVNGAATLPSDFMRANELVINSSPAEWVPLETFLDPTSDNSTYGWTIYGNQAKIVPVPSTTTAGTLYYFRSEPALSSDSSSPLMPVVYHSVIVAYASHLCAARRQDEQRASLYLQEYGTFLKSMNDDNRTTIKRRIKFTRARDYATWE*
JGI25930J51415_10000822	F084136	AGG	MEAVLVALIGGAXTIVAILVEKGRKENQRDHNNVMDRLDLVSSEIRKDIRQVRYDLTDHVNGPAHLPAPAPAKVVRKRPKAG*
JGI25930J51415_100008220	F043913	AGGA	MIRAADLMGNVAGGGEMAEVSFDVYDIANRIQRGDESGWRGDPSASLMFNPLAGRFEVWMVDAMGTPYVACSHTRCDHTLIVKLIEGDWQKGKALHDDLMKKNKQIRDAHETAEKEKRLELADKLHWALVRDVGHLEGSNRRIHSMNEKGK*