Scaffold JGI26239J51126_1005534

Overview

Basic Information

• Taxon OID: 3300003498
• Scaffold ID: JGI26239J51126_1005534
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4012
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027651	Metagenome / Metatranscriptome	194	Y
F076483	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26239J51126_100553413	F027651	N/A	QLKYANTFDIWPKGGYNSSMKIRNKDKSNKDLKMNKMKLNYEVMNLANDINKNYHGWLSCVTLTSEYKKESRDFGHGFGVFTGSKYYRIEASGKSGCNSIIDQENSKLYVTAYKAKHVWGFVAKSDSENHKRGDILNKNYKVVGNILDGEKANLGMPNSQYPNFQDCWNGATDWNALV*
JGI26239J51126_10055348	F076483	AGGAG	MQMIKTNTLSQIFKEHNIEVDRISKIRTLQTFLNDTTLDIPLMRRAVSMLNLRWILRNIQVNNSEHVNINKIIKLTKEVI*