Scaffold JGI25925J51416_10034982

Overview

Basic Information

• Taxon OID: 3300003497
• Scaffold ID: JGI25925J51416_10034982
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1411
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044299	Metagenome	154	Y
F093494	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25925J51416_100349821	F093494	AGGAG	MNMSYCMFQNTATDLRQCLESMDAAETLSELGLSRDEKRSYDLMREFCQSFLDIAYRLDDAEANGVEQ*
JGI25925J51416_100349822	F044299	GGAG	VNKVSKYLVSIDRPPYVNGRRVGQATPCQSYGQPAWFISFRDGYTHTIDPVFTDEDGLNGAPSVREYATNLGFGVEP*