Scaffold JGI25924J51412_1028687

Overview

Basic Information

• Taxon OID: 3300003491
• Scaffold ID: JGI25924J51412_1028687
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 933
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25924J51412_10286871	F022414	AGGCGG	MSKTQETKLAEQLANLADDHWFNPAIFGRYLAEQPLYTVDRIMEMVSYIISEQAKVYELLRLKGTSSEGLLLANELNECIKAYQEVTVISNLTLPKPTVYNIKREEPVKSKQYGWIDIDKNPFDQV*
JGI25924J51412_10286872	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALAEAAAKGITFTVEAPVSKAK*
JGI25924J51412_10286873	F000441	N/A	NDQLSKAQALLWSGSLHEVDEAHNIVSNLIQDRLEQVSN*