Scaffold JGI25926J51410

Basic Information
Taxon OID	3300003490 Open in IMG/M
Scaffold ID	JGI25926J51410_1003167 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003490 Open in IMG/M

Scaffold ID

JGI25926J51410_1003167 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3383
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3383

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F023585	Metagenome	209	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N
F064496	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10031672	F024265	N/A	MNEPFTSSEAKAKGILSDRYPGKEMAKLYAENRNQATIDMLRDAVFTLITNQIPTCTIAQVLRKTHGAIQYHLRCLEGDGKLKRRNKRCHWREAVEA*
JGI25926J51410_10031674	F010463	AGGCGG	VNDLVLAATIHRVKCCEEKIAQFEQLISTLTAQMAHNRSELASKGLANLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRGIK*
JGI25926J51410_10031676	F023585	AGGAG	MSVKRLSLVDEFHGLVSRRLKDLFKRLNHAEVENFKDIISHLDYSHRITKELLERAKKYQKRDAEKAKK*
JGI25926J51410_10031677	F033350	AGGAGG	MSAVDVEVPETKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVWLWASWPKAPKW*
JGI25926J51410_10031679	F064496	N/A	LIDKSLSTTPAEEVPYGGFQDINTEKFEEAPKAEPTKISKADLADITAKLNAPNKTNGTEPRDMELKFGKYKGSTLRQIAAFGDKGLDYLDWLSKQELKPGKDGQPYKNDIIRNEIIQEIFLESEALSKGTPDEIPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25926J51410_1003167

Overview

Ecosystem & Geography

Associated Families

Sequences