Scaffold JGI25926J51410_1001167

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1001167
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5009
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F033806	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10011673	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAQVKIKELQEVADVARAHIERALGDNQLGMFLNRPVVRYTFVETRRFDTKRAREILPIQVIEALEIVSTSRRFSLVXEDN*
JGI25926J51410_10011677	F033806	AGG	LNFENKAREPLFSIHNHSDGHIALYLEEQNAVKDMLEDVVGNFDYKMLMELQGICAESVKAEGHFDRLETARENLGDGAPLLCSMTEQEALILAEDLIRAVKFARIGREAQGNYPSLKVVQ*