Scaffold JGI26540J51217_10000910

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26540J51217_10000910

Scaffold JGI26540J51217_10000910

Overview

Basic Information
Taxon OID	3300003489 Open in IMG/M
Scaffold ID	JGI26540J51217_10000910 Open in IMG/M
Source Dataset Name	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25712
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (34.21%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location Name	South Africa: Cape Town
Coordinates	Lat. (^o)	-33.927	Long. (^o)	18.452665	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017165	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26540J51217_100009101	F017165	N/A	FDEHRGLIAFSAGHRVHVIGANQWLADTFVWRPDLHRYAPSWIKQAVSTMTMIRSVVDESSMSMIPNELLFEIFSFL*

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