Scaffold JGI26238J51125_1040534

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1040534
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 990
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F033113	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_10405341	F000302	AGGAG	MVAVMSQDTKDRIAEMERQKIDLENRLEMLGYSGNLVRMHELENEIYEIEDTIRKLLP*
JGI26238J51125_10405342	F033113	AGGAG	MDNKNTRKILLFIDGIGGINRQEMVHGTLYLKLDNDRDCDFIHTEIRKXXXEFVNPEGGVNMYAVGDEFAFDFVPXDREAPVFXDXDXSGXEDMMPSDIDEQINGVWSEFAEEEMLANVDTMIDLENDAKEGR*
JGI26238J51125_10405343	F003357	AGGAGG	MTRNSWIVKQVYTDAKENLGWLFKVVLLAGGFIAGIKLLTFFNVPKEILFPVMWIAFILVAVYKWYSMKYDWKKDDKAYDRASK