Scaffold JGI26238J51125_1018055

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1018055
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F025387	Metagenome / Metatranscriptome	202	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_10180552	F025387	GGA	MTKRVEQLGEMIVRAITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEXKDGDKTTS*
JGI26238J51125_10180553	F050676	GGAGG	METKLPVKSRVADKYQPMLTYYAELIGLCHETVAKTQSLQMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISKTNEQRSHVA*
JGI26238J51125_10180554	F003834	AGGAG	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKEEISHSLLKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDNEMGKEKINTNTIPKPEFLSITK*
JGI26238J51125_10180555	F003677	AGG	MVDEALYFFKKDVGKKVYEIEYEATYVTKWQVLANDENEAFNSWLENNKQDLVTEDGKDCVCSYVKDYTQMGKTQVIAEIKYNKKDDEVYADES*