Scaffold JGI26238J51125_1002729

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1002729
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5831
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039175	Metagenome / Metatranscriptome	164	Y
F086307	Metagenome / Metatranscriptome	111	Y
F096226	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_100272911	F086307	AGGAG	LTAASAISDLLNLLHEEWLDEGRKTVVKTMLEDMIDRMEDNLSMDDLR*
JGI26238J51125_100272917	F039175	N/A	MVEFRKSFANALTRLGFIEKSYTETTTRPSVAQPYMSTDTGAKLPIFPFPLTMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCNNCSKEFQYAPTPDNPDEQPFEANGDNAEAHPRKKKAVAVPKAQALVCDTCGSNDLLRPIPEHRKTLENLMMEPVNSNQQTLEDVARQLERDFEIADNAYLLLLKNYKI
JGI26238J51125_10027299	F096226	GGAGG	LSLSRKDLESIICIACSRKYGEHYKGNGTKFNLPELMSCMFRIQGTLVADGIKNEDPKPSPPVDELEYDC*