Scaffold JGI26238J51125_1001666

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1001666
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7676
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006643	Metagenome / Metatranscriptome	368	Y
F029246	Metagenome / Metatranscriptome	189	Y
F091750	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_100166611	F029246	GAGG	MGSNLGLIGIGLVGLFATSMIKFVAIAAIAWGAWKTYQDWEAQ*
JGI26238J51125_100166613	F091750	AGGAG	MGEIPDEGNLKEVLKKDNFMRKVYESELGEDFQSFEDGVAVGEIRPVPLAPMSPFEPGPWPDKGEEDV*
JGI26238J51125_10016669	F006643	GGAG	MADTELRDIELRLERMHNALSRQEEELESWRHKSARLPNWIRNGGVALFMALFAQSMTAVWWASEITNTQKNLISDVKVNTEYRIASTERYNDIMIELTRIQVTMDNHFNKQE*