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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003478 Open in IMG/M |
| Scaffold ID | JGI26238J51125_1001097 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9701 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F007003 | Metagenome / Metatranscriptome | 360 | Y |
| F043442 | Metagenome | 156 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26238J51125_10010973 | F001066 | N/A | MEGDIFKIKPLDXHASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISSKIVVSEEQRFNKLGDIESIFRQIKAQKTGD* |
| JGI26238J51125_10010974 | F043442 | AGG | MEALQECKVKNVVLSFKYSYANITKFRDRFDKLFVVAGTKTEPERYYELLKKHRGVYDYAIQYDVMYNMNETLKHYRKEREMGIDWTIPVLQENYLNHLSQLRLEPDTYVCLGEVHGRDETEDQIRKLPPNLKYHGLAKGRYTTKTKLFESLDTSGWISAAMSKKCEVWNNNSTNFMFFGDKGKTMIPMLNHACEVHKEYLELINLNKQDIIDGDYKALLKAPFALLYLPMCKQLNILKDNFNL* |
| JGI26238J51125_10010976 | F007003 | AGGA | MINFYTKNIDTNRYTDIVCRTIMLNGSNGKHLSGYYAWENFKDNWELNIIPTTKQEEFKKFYEHLDIETSDGIAWGVTGKKVIYMFVNDSKNPFILRSNIMPLAHELLHAVYQDGIGTHHITRKYDAPEGRAGTKGAAATVIVHDNWYGSKKTIKFWIRHKFIWLPITIPYIPIKQAKKDYSV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |