Scaffold JGI26238J51125

Basic Information
Taxon OID	3300003478 Open in IMG/M
Scaffold ID	JGI26238J51125_1000083 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32785
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (51.02%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034597	Metagenome / Metatranscriptome	174	Y
F039114	Metagenome / Metatranscriptome	164	Y
F081741	Metagenome / Metatranscriptome	114	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

246

Metagenome / Metatranscriptome

174

Metagenome / Metatranscriptome

164

Metagenome / Metatranscriptome

114

Protein ID	Family	RBS	Sequence
JGI26238J51125_100008313	F016619	N/A	MAITIAQNALHKSLSGKTLSIQSELTSKLKSVVVDITYAAGDNYATNGNVVDLSLGSRIGTVIGAQIFDGNKGLLLQYVPSATNAAATGKIKCYGEDHTAKGSAARAFAELANASTATNSMTCKIRVLGF*
JGI26238J51125_100008318	F081741	GGA	MVDPLLVVVIATVSGAILNTIRGFLGSESSYDIKKFFGAVIVSGFAGIAIAQTIGLSGIDTLGLALIGLTAGFSVDYAVSKAKKLTED*
JGI26238J51125_100008321	F039114	GGA	VAEKVKIDSGQTKIGSKIVDIHQKNEYTRVNNYKEGMCFSCFGNGIPVGAGVNDICGDCAGKKGRETILVPIKEIVYGMCHFCGEYKHGMEQINARLCQKCHRKVSNIMKSYNAKGGMFEVDPFWKSMRRKHGKDWQHILGKNLGNKR*
JGI26238J51125_10000837	F034597	N/A	MIKSFEIPWDNNTKETVSYEDDITFGELEAILNQCLDMTQVNEPKVNLPLYRQLILTAVITKAPFKVKEVASIRNLKSSVAKTIMKEVMKDYPLAKYLEEWVETFVGQDIAEAQEISTTSSQGNTVGRKTKSTRSQ*

Protein ID

Family

RBS

Sequence

JGI26238J51125_100008313

N/A

MAITIAQNALHKSLSGKTLSIQSELTSKLKSVVVDITYAAGDNYATNGNVVDLSLGSRIGTVIGAQIFDGNKGLLLQYVPSATNAAATGKIKCYGEDHTAKGSAARAFAELANASTATNSMTCKIRVLGF*

JGI26238J51125_100008318

GGA

MVDPLLVVVIATVSGAILNTIRGFLGSESSYDIKKFFGAVIVSGFAGIAIAQTIGLSGIDTLGLALIGLTAGFSVDYAVSKAKKLTED*

JGI26238J51125_100008321

GGA

VAEKVKIDSGQTKIGSKIVDIHQKNEYTRVNNYKEGMCFSCFGNGIPVGAGVNDICGDCAGKKGRETILVPIKEIVYGMCHFCGEYKHGMEQINARLCQKCHRKVSNIMKSYNAKGGMFEVDPFWKSMRRKHGKDWQHILGKNLGNKR*

JGI26238J51125_10000837

N/A

MIKSFEIPWDNNTKETVSYEDDITFGELEAILNQCLDMTQVNEPKVNLPLYRQLILTAVITKAPFKVKEVASIRNLKSSVAKTIMKEVMKDYPLAKYLEEWVETFVGQDIAEAQEISTTSSQGNTVGRKTKSTRSQ*

NMPFamsDB