Scaffold NAP4_1064913

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1064913
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 733
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
NAP4_10649131	F019396	AGGA	METQFEPYLKLDPSGIKCMAQQTYEPLVSKDGKTFCKNYNFPNEYAYRDQKDRPLYTEDVVDWFFQNELHYLKKFEGKPYAPEIIDIKNKKIYIKWYGKSCNQIIYANKPWPVPDWQQQIKDIILDQYNEGVYKLTMYPHCHYVDNNNQMKAIDWYGCVPVESPYIAEKWMQGIIHETAQFRLEETGAAVDSVLNLETMYKRSLS