NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FeGluAir_10501038

Scaffold FeGluAir_10501038


Overview

Basic Information
Taxon OID3300003473 Open in IMG/M
Scaffold IDFeGluAir_10501038 Open in IMG/M
Source Dataset NameFe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Source Dataset Sampling Location
Location NameDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)Depth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075038Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
FeGluAir_105010382F075038AGAAGGMANTWEIRGGRVTVVEDASTASLVVVARDLKDRDSKIAVLEEIVRKMKG*

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