Scaffold SC02B_1412532

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SC02B_1412532

Scaffold SC02B_1412532

Overview

Basic Information
Taxon OID	3300003459 Open in IMG/M
Scaffold ID	SC02B_1412532 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S14-SC02B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	510
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location
Location Name	Douglas Channel, British Columbia, Canada
Coordinates	Lat. (^o)	53.6667	Long. (^o)	-129.1333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063710	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
SC02B_14125322	F063710	AGGA	MKKPRQRSLRVRVEHEPNRFSDDCLERIYEQLHPTKSREVTPDKNTKQ

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