Scaffold DC05B_1016378

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold DC05B_1016378

Scaffold DC05B_1016378

Overview

Basic Information
Taxon OID	3300003454 Open in IMG/M
Scaffold ID	DC05B_1016378 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S5-DC05B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location
Location Name	Douglas Channel, British Columbia, Canada
Coordinates	Lat. (^o)	53.6667	Long. (^o)	-129.1333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005243	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
DC05B_10163781	F005243	N/A	MSVKQINPELQDKDPQMSKEELAKRREEITAFYKDNIPHLEVQADYEMLLSAIEKARAERMQAQMYMAQQYAAQKEGGQPSTPEADEFKAAMEDAVNPK*

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