NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold ERB_1009674

Scaffold ERB_1009674


Overview

Basic Information
Taxon OID3300003453 Open in IMG/M
Scaffold IDERB_1009674 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0111477, Gp0111476
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10000
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Volcanic → Fumaroles → Unclassified → Volcano-Associated Fumarole → Volcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic

Source Dataset Sampling Location
Location NameMt. Erebus, Antarctica
CoordinatesLat. (o)-77.533333Long. (o)167.116667Alt. (m)Depth (m)0 to .02
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F042051Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
ERB_100967411F042051AGGAGMTTFGEISWNDDVFVGSDNGKKNNNKDLFLRLEEGSNEMRLVTQPYQYLVHKFKKDPNNPRDFGQKVGCSSIHGSCPLCADGEKAKPRWLIGVISRKSGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAADQKIKDDADLEDLKRRVTPLTPDQVQKRIDRIMSLGDAASAATAPATTKVATAAPKIAPVSMTDDEDLDESFPAYSGNA*
ERB_100967415F036462N/AMGQPVRLGDLLGNELETDFQNFDLSEVQQVLEYLRDTDAIDLVHAEMLQQRALRGADILTEYLGKLTKTVGYLETKVASTKNKVSLEYKASDGARTTLDMKKWAADVSPEVEAVQIKLAEAKGSKLFLERKYEILIKAHHHFKDIAQGLRRTIVGYSQGTIGDKIPEGYE*
ERB_10096743F038776GGAGMSKFSIDYSGLENKIYKKAYRLSDVKDRLESVAFDIVRFKDSDKAAELWQVQSADDGEYIVALYQPEEEQKTASDWEVVLTKTSGDLQVYYKDDPLVRIASSKLGIPKTELSKVPEYLPSKLATNKKLVKALLNELPESTKKLVLEKYPELV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.