Scaffold JGI20214J51088_10230145

Overview

Basic Information

• Taxon OID: 3300003432
• Scaffold ID: JGI20214J51088_10230145
• Source Dataset Name: Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1296
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Sacramento, California, United States
• Coordinates
  • Lat. (^o): 38.1072
  • Long. (^o): -121.6485
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040697	Metagenome / Metatranscriptome	161	Y
F064732	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20214J51088_102301453	F040697	N/A	MQLIEKLVDHEIMDDILREEADGYGDLIAAALVHNVXVKSLQTRIVELRYLRTTWIS*
JGI20214J51088_102301454	F064732	N/A	APERCTMPPAQSAERHVKFPSSPMDPDPCIAAIATRSTSLQDPPVPPGHPEDTELFDYYLIR*