Scaffold JGI20214J51088_10003843

Overview

Basic Information

• Taxon OID: 3300003432
• Scaffold ID: JGI20214J51088_10003843
• Source Dataset Name: Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9923
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Sacramento, California, United States
• Coordinates
  • Lat. (^o): 38.1072
  • Long. (^o): -121.6485
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045183	Metagenome / Metatranscriptome	153	N
F060094	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20214J51088_1000384311	F045183	GGAGG	MKLKHTLKRLINRLLHPSLRESEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLSLANYTGAAEDWLLYFFGGFTVVGVLSVHKNVMRFLYRIAQFDKPVEGQDRTIMITAETVTLLGFLMAAMLFLNEFQSTGFGM*
JGI20214J51088_1000384312	F060094	GGAG	MSNRQASHVPMQRCGLVLCGFPAFMFAAALLLSCTAQQPEGVPVYRSERGFAIGLPAQWLAVNPLELGGKENPLGTHNPQIRGLFTAEGLKALKEKALSGGVELFVNLETSDETFMESINIQVAPGSVVVEDSDVVPACAETEKSLAALYGNPVKMDACKALKIRRIPAFFMEYRVEKLALAHAQYLIQLKADRYVVMTLTCRPKNLPKLRPEFDAIAASFRAT*