Scaffold JGI25921J50272

Basic Information
Taxon OID	3300003430 Open in IMG/M
Scaffold ID	JGI25921J50272_10004670 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003430 Open in IMG/M

Scaffold ID

JGI25921J50272_10004670 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4330
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4330

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047649	Metagenome / Metatranscriptome	149	N
F057309	Metagenome / Metatranscriptome	136	Y
F072267	Metagenome / Metatranscriptome	121	Y
F072285	Metagenome / Metatranscriptome	121	Y
F074802	Metagenome / Metatranscriptome	119	N
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100046701	F057309	GGAG	MTNPLIDKYNEIYGKKEKPKFPRIEDYEGEETFADELKKLRDTSTIPVSKIKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEF
JGI25921J50272_1000467012	F074802	GGAGG	MTTKCTCSYIQIGTKTSNTQNLNPDCPLHGTDSVWHNSPEQVKKREERSQRLRELYDTARKARENLK*
JGI25921J50272_100046704	F047649	AGGA	MRYYETRTYEHQCDFDAKNRAQKASQDYYNKWINLRKEVRNLVREQNLTITPDFAKLIGLK*
JGI25921J50272_100046705	F072285	GGA	MKYPQSVNKSIFIREVYEDTYETPYDYIVDTMIWENRVDELHTIWCKGKEPRKDEK*
JGI25921J50272_100046706	F072267	AGG	MTEPTLKIGPSGYKLNPNKLKGAPQSILPYFVGAFYYTEDFEYFDVIKPYLDIPEPPKSLEEIQQECEEKFEKLIERTKNSFYKSKYIAETLYETKFNRIIENFEYARENGFFPPKLTGTLDYSNLIATGSNITSSFVIRCGTDNAGYYTIGAGIVKYYMNKKPNWLVRNCAKIFFDFTWKDV*
JGI25921J50272_100046707	F076003	N/A	MKITAHELAVIIDTFNHSLMVSNWNGVYTHKSRERVRDLIADIMGEMSVEIITDKAEFTIDADAGI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25921J50272_10004670

Overview

Ecosystem & Geography

Associated Families

Sequences