Scaffold JGI25921J50272_10002974

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10002974
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5527
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006846	Metagenome / Metatranscriptome	363	Y
F028166	Metagenome / Metatranscriptome	192	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000297411	F088905	N/A	MSENKDIDMVDGLPVAETVVAEEAKPKAETPAPASNADAVVDYWANAWANRGV*
JGI25921J50272_1000297412	F028166	AGGAG	MTNGNDLTGFNEVKAGDTNNLDLNPTGQAPASAFPSTDKSTQDGAGLGQNGK*
JGI25921J50272_100029748	F006846	AGGA	MKMLIEFVERYLMRPKRLREAIESVVHENDELLRTLKQYEEDDTPTNLTWAEGDTWYGWTYNSNAKRYYFDDIGNKSLMGLWESQWAREAESEAK*
JGI25921J50272_100029749	F078716	N/A	MSENGTGTPTAPVSEPSGAVTSRETPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPQKKGRPKKV*