NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10000124

Scaffold JGI25921J50272_10000124


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10000124 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24487
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (54.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F001968Metagenome / Metatranscriptome610Y
F004255Metagenome / Metatranscriptome446Y
F004546Metagenome / Metatranscriptome433Y
F005478Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_1000012412F004546GGAGGMSKAKKKEDVEEFPFDTFPYLLKYVDGKDRKKCYFQNEEHMKKHIERYKLKKKDYTTGYKYAE*
JGI25921J50272_1000012422F000345N/AMTKQQPNEFGKALQEWWDSDACKKLQKETKEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAENEGTSHRGLQDALGIYPSGFWVDHLMEVHNALWSYYHDKKQEQDLKDDLDALENFIK
JGI25921J50272_1000012440F000744GGAGMDEIKVNLNAHEVGILLTALQNLENIDEIYIARDYGSAPALYNKLYSLWEQMDTSTTGLRYDLTPSF*
JGI25921J50272_1000012451F005478GAGMYDDYDLDYTFSNDYNLDEDSYADLGASDLDEDYARGGQDYQDLAYRHYA*
JGI25921J50272_1000012456F001968GAGMFDEMWQEIQDAPGEIFDIPEMNDEDFNLNEYLAADYDY*
JGI25921J50272_100001247F004255N/AMTEKAKIFYDIWKCAYQRRYMYRGTPREYGEHDTILMCLNMKNADWYQFDTEKPRYV*
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