Scaffold JGI26084J50262_1001576

Overview

Basic Information

• Taxon OID: 3300003427
• Scaffold ID: JGI26084J50262_1001576
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12583
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (32.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045049	Metagenome / Metatranscriptome	153	N
F065434	Metagenome / Metatranscriptome	127	Y
F084741	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26084J50262_100157622	F065434	N/A	MKELRWDLTRAQIVWLQKIRNQNWLKLEDSEMINSILYRTDYDGEQKLRLNSLRETYITYKRAELV*
JGI26084J50262_100157626	F084741	AGGA	MIIIGFGLSIGTMNGFVQNYIGFAGVDNEIAFSFMGMMFGTLGIFGIDYKKLLNGLK*
JGI26084J50262_10015764	F045049	N/A	MXRKLKIFWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARASEYRLKSYILEHRHLPIEENIYTITSVDGEEIEIDESTYGEVDWRWLKENGWEDMIPSPMDNLTPEGISDIYLGKIFNGISNIKSKIVNWYESLFKEEYIKTMRG*